PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g110040.2
Common NameMTR_4g110040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 439aa    MW: 48497.8 Da    PI: 9.6088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g110040.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.2e-17136185255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Medtr4g110040.2 136 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 185
                      889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-24131207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-19132205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.653134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.67E-15136189No hitNo description
PfamPF000103.6E-15136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MELPQTRSYG AGGAGRKSTH DFLSLYSNST AEQDPRPSAQ DSAAKLGQWT LKERTSQSFS  60
NNHHGSFNSR SSSQTTGQKN QSFMEMMKSA QDCAQDEELE NEGTFFLKRE SSNVQRGELR  120
VRVDGKSTDQ KPNTPRSKHS ATEQRRRSKI NDRFQMLREL IPHSDQKRDK ASFLLEVIEY  180
IHFLQEKVHK YEGSFQGWNN EPEKLMPWRN NDRPAESFQP RSANGGSNPS PTLLFASKVD  240
EKNITISPTT HGGIHNVESS LSTTTALKTI DHPSGITNKA FPSPISSQPN FLTSTQIGGS  300
GGAVSQLRRR LSSDAENTNY QPSVESQTMT STSEKLKEKE LTIEGGAISI SSVYSQGLLD  360
TLTQALQSSG VDLSQASISV QIELGKQASL RPNIPMPMCV SKDDEDPSKN QRKMRSGSRV  420
ASSEKSDQAL KKLKMCRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.148320.0pod| root| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g110040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458032.10.0transcription factor BIM1 isoform X2
TrEMBLA0A072UQV40.0A0A072UQV4_MEDTR; Transcription factor BIM2-like protein
STRINGXP_004508645.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.33e-80bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]