PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g112380.1

Common Name

MTR_4g112380, NF-YB5

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YB

Protein Properties

Length: 157aa MW: 17476.9 Da PI: 4.5183

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g112380.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	74.9	1.3e-23	11	94	3	86
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP++ ++++d+++++ ec +efi +++se+++ c re+++ti+++ +l al lGf +y+e++ + Medtr4g112380.1 11 KEDASLPKATMTKIIKEMLPQDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEEVYAA 94 6899***************************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-38	8	140	IPR009072	Histone-fold
SuperFamily	SSF47113	7.42E-35	12	142	IPR009072	Histone-fold
Pfam	PF00808	2.5E-20	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP QDVRVARDTQ DLLIECCVEF INLISSESNE 60 VCSREDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKL ETMQDTLKAG KWSNGAEMTE 120 EQALAEQQRM FAEARARMNG GAIAPKQPDG DQNKIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-33	12	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.1448	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g112380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT133990	0.0	BT133990.1 Medicago truncatula clone JCVI-FLMt-2B5 unknown mRNA.
GenBank	JQ918278	0.0	JQ918278.1 Medicago truncatula nuclear transcription factor Y subunit B5 (NF-YB5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003609137.1	1e-114	protein Dr1 homolog
Swissprot	P49592	1e-92	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	G7JT12	1e-112	G7JT12_MEDTR; Nuclear transcription factor Y protein
STRING	AES91334	1e-113	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4766	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	4e-95	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Medtr4g112380.1
Entrez Gene	11443628

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]