PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g112490.1
Common NameMTR_4g112490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 205aa    MW: 22822.8 Da    PI: 10.0304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g112490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-1451101155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y GVr+++ +grW AeI+d s   ++ r +lg+f+ ae+Aa  ++ a++ l+g
  Medtr4g112490.1  51 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDRAEDAALSYDSAARLLRG 101
                      5899******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.36E-3051111No hitNo description
PROSITE profilePS5103219.7752109IPR001471AP2/ERF domain
PfamPF008473.1E-852101IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1852110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-2752110IPR001471AP2/ERF domain
SMARTSM003806.3E-3352115IPR001471AP2/ERF domain
PRINTSPR003671.0E-65364IPR001471AP2/ERF domain
PRINTSPR003671.0E-67591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MENKDTLKFP HQTHKNNNIS LIPHEIDKPY ENKERNTIKK IPKTSNKGHQ KKYLGVRQRP  60
SGRWIAEIKD SSQKLRLWLG TFDRAEDAAL SYDSAARLLR GRNAKTNFPN THEQDFSILG  120
KNPRAFQLLK HAMMKNHAVS SSSSVYSTVM MPWKNDQLDA IVEETIVCSI PDDEGSTAAG  180
CSGISFGNSK VYSSVVVAPS FSAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1651109160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g112490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1378190.0AC137819.22 Medicago truncatula chromosome 8 clone mth2-21i24, complete sequence.
GenBankAC1620310.0AC162031.12 Medicago truncatula chromosome 8 clone mth2-194a22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609147.11e-153ethylene-responsive transcription factor 3
TrEMBLG7JT221e-152G7JT22_MEDTR; AP2 domain class transcription factor
STRINGAES913441e-152(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-27related to AP2 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]