PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g113970.1
Common NameMTR_4g113970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 256aa    MW: 29096.7 Da    PI: 8.1233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g113970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-0779103126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C  f+  GtC+ G++C++aHg
  Medtr4g113970.1  79 FKTRICTKFRF-GTCRNGENCNYAHG 103
                      69*****9977.*************8 PP
2zf-CCCH28.62.4e-09146169225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k++lC+ ++ + +C+yGd+C+F H
  Medtr4g113970.1 146 KMKLCKKYYIGEECPYGDKCSFLH 169
                      789*******66************ PP
3zf-CCCH33.76.1e-11221246127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ ++ tG C++G++C FaHg+
  Medtr4g113970.1 221 WKTKLCQ-WQHTGSCPFGETCDFAHGE 246
                      8******.*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.32E-877109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-1377111IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-578104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.65278105IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-579103IPR000571Zinc finger, CCCH-type
SMARTSM003560.0095144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.047144172IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-8146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-11215246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7219246IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4220246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023220247IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-8221246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNFPDDIPTC RMSPPQFASS NNDIIEVRPQ IPMQNDHFEP HSFKRARIAD NNPPPSGLMC  60
PPSRMIQPPP NRGTSSIFFK TRICTKFRFG TCRNGENCNY AHGADEIRQP PRNWQELVDP  120
RNEERHQVET RQQPPNWDED QKIIHKMKLC KKYYIGEECP YGDKCSFLHE DPARFRDASW  180
KTRECSAISV GNIGSPKSFG YGSNNLEGIR AVNKPARSAY WKTKLCQWQH TGSCPFGETC  240
DFAHGEAGNV NSSVC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g113970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520670.0AC152067.21 Medicago truncatula chromosome 8 clone mth2-22g24, complete sequence.
GenBankAC1579830.0AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609280.30.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-58C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLG7JVC10.0G7JVC1_MEDTR; Zinc finger CCCH domain protein
STRINGAES914770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-61C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]