PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g114730.1

Common Name

MTR_4g114730

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

YABBY

Protein Properties

Length: 192aa MW: 21536.6 Da PI: 8.3382

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g114730.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	203.6	7.8e-63	12	164	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + + +++ +++ +++ + + Medtr4g114730.1 12 AAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV---------QAPSHCMNPEYRIRTSS--TPKCNDR-I 93 689******************************************9999999884.........22222222222222222..2222222.2 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + +v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Medtr4g114730.1 94 AMRSAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 164 23344445555556799**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.8E-70	12	164	IPR006780	YABBY protein
SuperFamily	SSF47095	4.58E-8	108	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSSCSIDVAP AAAEQLCYIP CNFCNIVLAV SVPCSSLFDI VTVRCGHCTN LWSVNMAAAF 60 QSLSWQDVQA PSHCMNPEYR IRTSSTPKCN DRIAMRSAPT THVTEERVVN RPPEKRQRVP 120 SAYNQFIKEE IQRIKANNPD ISHREAFSTA AKNWAHFPHI HFGLMLESNN QAQIENVSEK 180 RLMSRSALMN K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.13634	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g114730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052446	0.0	BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA.
GenBank	BT133581	0.0	BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003609353.1	1e-141	axial regulator YABBY 5
Swissprot	Q8GW46	1e-87	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	G7JE42	1e-140	G7JE42_MEDTR; Plant-specific transcription factor YABBY family protein
STRING	AES91550	1e-141	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-90	YABBY family protein

Link Out ? help Back to Top
Phytozome	Medtr4g114730.1
Entrez Gene	11439230

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]