PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g118830.1
Common NameMTR_4g118830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 182aa    MW: 20409.7 Da    PI: 9.7648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g118830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-082972855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +Er RR+++++ f  L + +P++    ++  +   i+ ++++YIk+L+
  Medtr4g118830.1 29 VERERRNKLKQMFTHLTTTVPTL----HPNATQEVIVNETIQYIKELE 72
                     7*********************9....7889999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3152171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-42777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-102887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-102888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-52976No hitNo description
PfamPF000104.7E-62972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEEYSNKSLS EMSNRKRATT IKTEEVLNVE RERRNKLKQM FTHLTTTVPT LHPNATQEVI  60
VNETIQYIKE LEEKKKILEE MKESKSKKHV ERGFNLLVPC RNRNPNCSVT VTGSSNVAFF  120
GIESVAKPGL ITVILKVFLK NEAEVLAANV SVNDGNLILA ITALVQNGAV IEKIKREIMS  180
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g118830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1473640.0AC147364.7 Medicago truncatula chromosome 8 clone mth2-68g24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609586.11e-127uncharacterized protein LOC11405343
TrEMBLG7JJ331e-126G7JJ33_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES917831e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143301314
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]