PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g119390.1
Common NameMTR_4g119390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 1164aa    MW: 129682 Da    PI: 9.8545
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g119390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-085590340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++ E e++++a +++G++ Wk++a  +  +Rt +++
  Medtr4g119390.1 55 QWSKAELERFYEAYREYGKD-WKKVALAVR-NRTMEMV 90
                     6*****************99.*********.***9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-95299IPR009057Homeodomain-like
SMARTSM007172.8E-452100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-45591IPR009057Homeodomain-like
PfamPF002494.0E-75591IPR001005SANT/Myb domain
CDDcd001674.38E-656100No hitNo description
SMARTSM011351.2E-52631732IPR033471DIRP domain
PfamPF065847.6E-32631731IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1164 aa     Download sequence    Send to blast
MGPTRKSRSV NKRFSNIREA AASKDKDAAN TGRNRQKACP GIQKKRKLAD MLGPQWSKAE  60
LERFYEAYRE YGKDWKKVAL AVRNRTMEMV EALYTKNRAY LSLPEGTASV VGLIAMMTDH  120
YSILGGSDSG KESNEDSEIM KKSKKRPRGK PNDNKAVDGH FSDHSQPHSV ASDDGCLSLL  180
KKRHSGIRPH AVRKRTPRVP ISYSIGKDNE GKFFSSARQD SKQMIDTTDV THKIALALSE  240
ASQRGGSSKK VGSPNKKNMP SPNLKSGKKH VKSGIVGAKF RKSDMDEASS ELSLGSTEGD  300
NGDYSGKLIH RNSRENTGRV RNQEKGIKHY RKSLEPQKNT NKHLNDIKEA SSGTDDGKNQ  360
SSFKSNFDTD FANAKSVRSS YKGPRKKSKK QHFEEDEGSA FDALKTLADL SLMMPETNPD  420
TESFVQFNEG NLDESKMETD NGNSSRKSGK VFSDKGDAAP KAEGAYQLSA GSRKRKQKSL  480
TLNNDETHTG SPLSGSQKIK VTDEVKKSTV KGKRSSVSTA HSRNLNMVKS LGNMSSNIVD  540
KAERGDSSFS PIIFLSTNQV GQANRVRPRR KMEKPKPMVQ QDHTMSENNF SGQHDKSIAL  600
YWRNSMERHK GMLINCLSSH QTRRWCISEW FYSAIDYPWF SKREFVEYLE HVGLGHVPRL  660
TRIEWGVIRS SLGRPRRFSE QFLTEEKHKL NQYRESVRSH YAEVLAGTKE GLPADLAQPL  720
IVGQRVIAIH PKTREIHDGS ILTVDHCRYR VQFDQHELGV EFVMDIDCMP LYPSENMPMS  780
LIRHHITPAR MNENLRDLTH NGKLTERKIS EHTMLSPTEK SDAIKGRCVP SAMHGFSSSC  840
KSQAKVAGSE ICNGQSASSS HSSFLEQLQS KEADILAISE LTRALEKKEL VLSELKHMND  900
GVSESQKYGE NSVKDSEPFK RNYASVLKQL TEANEQVSSS LFCLRQRNAY QASSSVLSLK  960
PIANLEDPGG HASSSNCSAC HNQESISQSH IAEIVESSRR KARTMVVQAT QAMSVFRKTE  1020
SKVERVEDVI NFINNRLSVD DSTASATNFL AIDSITLASR DQLTASSTLN ILARCPVQDD  1080
ELNSSSDQNE MKIPSELISH CLATLLMIQK CTERQFPPAD VAQVLDSAVT SLQPFCSKNL  1140
PIYGEIQKCM GIIRNQILAL IPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471476SRKRKQ
2566570RPRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.204200.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g119390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465520.0AC146552.16 Medicago truncatula chromosome 8 clone mth2-9d1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609635.20.0protein ALWAYS EARLY 3 isoform X2
TrEMBLG7JKB20.0G7JKB2_MEDTR; Always EARLY-like protein
STRINGXP_004508286.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]