PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g122240.1
Common NameMTR_4g122240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 118aa    MW: 13469.9 Da    PI: 10.1918
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g122240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406e-13321171106
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L+ c ea++ ++lela  l++r+   as    +m ++a+yf+eA a+r++r            + +         +l+ +  +sP+lk++
  Medtr4g122240.1  32 LVHTLMVCGEALQLNNLELAYMLVNRIVLSASLPTGAMSKVAKYFAEAFARRINR-----------FQRR---------ILHELLSASPYLKLA 105
                      689****************************************************...........2222.........33457789******* PP

             GRAS  95 hltaNqaIleav 106
                      hl+a qaIl+a+
  Medtr4g122240.1 106 HLIADQAILKAF 117
                      *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.1576117IPR005202Transcription factor GRAS
PfamPF035142.0E-1032117IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGVTFFQLQH YFRRLNPLDR WFLFDSQAGV ELVHTLMVCG EALQLNNLEL AYMLVNRIVL  60
SASLPTGAMS KVAKYFAEAF ARRINRFQRR ILHELLSASP YLKLAHLIAD QAILKAF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g122240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1595380.0AC159538.20 Medicago truncatula chromosome 8 clone mth2-48f16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460591.23e-23DELLA protein GAI
SwissprotQ84TQ71e-22GAI_GOSHI; DELLA protein GAI
TrEMBLG7JNX83e-80G7JNX8_MEDTR; GRAS family transcription factor
STRINGAES919855e-81(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.17e-23GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]