PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g123470.1
Common NameMTR_4g123470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 226aa    MW: 25859.9 Da    PI: 8.5415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g123470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.8e-101612203593
                      EEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3  35 tltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ++l  +  +   v+l+y+  +   +++++GW +F+ ang++ gD+++Fk +  +++++v
  Medtr4g123470.1 161 YVMLCGPYDNIIPVRLKYTDDPVPnVMFGRGWTSFCAANGIDGGDVLIFKCKCVMDKKYV 220
                      57777788888889997755555469************************8877666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.55E-916106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-816108IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0046130225IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-11143211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-9145212IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MCFRVKFPSN FTTKVKCSFF TVHVQRQDVG ELPPFFVAQY FYELPEQWHL LDGDGNTHSV  60
MFNKSVSRPL LTDGWSALRL FYEFSGSKII AFQYLGGSRF QIFVFAHNIT PVDYPPYHSM  120
SEAPSCYCTF EIPIAGYRST KSPKELPDTF GKFLRVKHHD YVMLCGPYDN IIPVRLKYTD  180
DPVPNVMFGR GWTSFCAANG IDGGDVLIFK CKCVMDKKYV IISKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g123470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1543911e-44AC154391.1 Medicago truncatula chromosome 7 clone mth2-143d17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637264.11e-120uncharacterized protein LOC11421867
TrEMBLG7JQ001e-168G7JQ00_MEDTR; Uncharacterized protein
STRINGAES920291e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1490222
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]