PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g124900.2
Common NameMTR_4g124900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 1098aa    MW: 122756 Da    PI: 6.2684
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g124900.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.1e-21126227199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W +++iyr++++r++lt+GW+ F + ++L +gD+v+F   +++
  Medtr4g124900.2 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFI--RDE 216
                      99*****************************9445444.38************************************************..567 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++++r+
  Medtr4g124900.2 217 KQQLLLGLRRA 227
                      88899999986 PP
2Auxin_resp125.14.7e-41252334183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++Gtv+g+sdldpvrW+nS+Wr+L+
  Medtr4g124900.2 252 AAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 334
                      79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-17125217No hitNo description
PROSITE profilePS5086311.885126228IPR003340B3 DNA binding domain
PfamPF023627.6E-20126227IPR003340B3 DNA binding domain
SMARTSM010192.7E-21126228IPR003340B3 DNA binding domain
PfamPF065074.4E-36252334IPR010525Auxin response factor
PfamPF023092.9E-99651056IPR033389AUX/IAA domain
PROSITE profilePS5174525.0289701063IPR000270PB1 domain
SuperFamilySSF542771.28E-89741048No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MKAPNNGYMP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ  60
TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKDAIL ASDFGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD LHDNTWAFRH  180
IYRGQPKRHL LTTGWSVFIS TKRLFAGDSV LFIRDEKQQL LLGLRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIYYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR QNFPGHPGMP DDGSDVENSF KRAMPWLGDD FGMKDASSSV FPGLSLVQWM  420
SMQQKNQFSG AQSGCFPSML SSNTLHSNLS TDDPSKLLSF QAPALSAPNL QFNKPNLPNQ  480
INQLQQSPTS WPQQQQQQQQ PLQQQQQQQQ QQQQQLQSLS QIPMNQFQQQ RQQQLPESQN  540
LTLLQQQITH QLQKQPQSSQ HAIMNNGVVA SNQITNQFQQ PQPLAYAQLQ QQQQLLQGSI  600
PLQQSIQSAS KNAFPLTSLP HDSQFHQQID QQASLSQRQQ QQTQSQQSSL QALQQSQPQR  660
VQPNLQATQM SQQNTSEQQL QLQFLQKLQQ QQQQQQLLST SNPLLQSQLL QQQNTNQQNQ  720
QLSQLPISQH HNQQFGNNAF STEKLLNSNN LSSSSLMQSQ QLSVNQTRNT QKPLTITRVP  780
STLTDGEAPS CSTSPSTNNC RITQPNLLKR NQQVPTTIGG ILAVEPTSNL IHDLQSTTTD  840
QLEASSGTSY CLDPGNVQQN LPLSNFCMEG DVQSNPRINL PFDSNLDGLM SDTMLSRGFD  900
SQKDLQNLLS NYDAAPRDIE TELSTADISS QSFGLPDMSF KPGCSNDVGI NDTSGVLNNG  960
LRANQNQRMR TYTKVQKRGS VGRCIDVTRY KGYDELRYDL ARMFGIEGQL EDPQRTDWKL  1020
VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SSAEVQQMSL DGDLGNVTIP NQASSGTDSG  1080
NAWRGQYDDN SAASFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1741535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g124900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444830.0AC144483.10 Medicago truncatula chromosome 8 clone mth2-12f13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609970.10.0auxin response factor 19 isoform X1
TrEMBLA0A072URY80.0A0A072URY8_MEDTR; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]