PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g126070.1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 423aa    MW: 47844.7 Da    PI: 5.3864
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g126070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.7e-351021932102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Flkk++e++ed e++ ++sws++ +sfvv+d++ef+k +LpkyFkh+nf+SF+RQLn+YgF+kv++++         weF+++ F++gkk+ll+
  Medtr4g126070.1 102 FLKKTFEMVEDLETDPIVSWSASRDSFVVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSDR---------WEFANEGFQAGKKHLLK 186
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+++
  Medtr4g126070.1 187 NIRRRSK 193
                      *****87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3798191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-5898191IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.1E-3398191IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-18102125IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-31102191IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18140152IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340141165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18153165IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAVAHGGYDG EIGGYNSRLI PSIKPELFND SANSSSYTYD DVSTERKESV LTEEEEEGAT  60
ASHAIHIKEE VLEEDDGAAH ASSSLRFPKP MEGLHEVGPP PFLKKTFEMV EDLETDPIVS  120
WSASRDSFVV WDSHEFSKIL LPKYFKHNNF SSFIRQLNTY GFRKVDSDRW EFANEGFQAG  180
KKHLLKNIRR RSKYNKLHQG GFNLMNPCVE SEVEKLKKDQ NMLKLEILKL RQQQENSNIQ  240
LTNVQERVRR AESKQYQMLF FLTKMAKRPL FMEQIIQKIK RKGEVDGNID MVKRPRLLGT  300
QGTSVDYRCQ GREQFATLQS ELNGLFPENM NTGRMEPPVS TPMEDGLGSS LHDLRACGGS  360
RQSVQDANSA YHVMSEKLLG ENSVVDEEMD VNDSNIYLEL EDLISKPTDW GGTASGLVGQ  420
TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2310019127129Heat shock factor protein 1
5d5v_B2e-2310019127129Heat shock factor protein 1
5d5v_D2e-2310019127129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g126070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637947.10.0heat stress transcription factor A-9-like
TrEMBLA0A396IIY00.0A0A396IIY0_MEDTR; Putative transcription factor HSF-type-DNA-binding family
STRINGXP_004507947.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-76heat shock transcription factor A2