PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g126350.1
Common NameMTR_4g126350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 328aa    MW: 36615 Da    PI: 9.8968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g126350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19188221134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Medtr4g126350.1 188 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 221
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.585182218IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13182221No hitNo description
SMARTSM004011.4E-17182233IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15186221IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.17E-12187215No hitNo description
PROSITE patternPS003440188213IPR000679Zinc finger, GATA-type
PfamPF003204.5E-17188221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MIPPPYRHSI SSSVMPLDLN QDQNHDLSSP NSSSSSSSSF SSLSPSYPTL FNSQDQVQKP  60
SYYCQTNHLP HDQEVEKINI PSSGSWNSST AENHENYKTK HKLTIRWKKE QISDEMNNNQ  120
EADQDGTSVK WMSSKMRIMK KMMVSDQTGS SNLTSNSKQI KFEDQKQPLS PQGTDNSSSN  180
NYSTIRVCSD CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RRALAAAAAS ANGTTIADQT  240
ASVKRKKLQK KKENKSKIEF DCSTVHMKKK HKLEAKPPSH QSRKEFITFE DLKLSLSENL  300
GVQQVFPQDE REAAILLMAL SYGLVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g126350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458498.20.0putative GATA transcription factor 22
TrEMBLA0A072URU20.0A0A072URU2_MEDTR; GATA type zinc finger transcription factor family protein
TrEMBLA0A396ILA80.0A0A396ILA8_MEDTR; Putative transcription factor C2C2-GATA family
STRINGGLYMA13G00200.12e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-19cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]