PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g126900.1
Common NameMTR_4g126900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25306 Da    PI: 9.1546
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g126900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.2e-1786141156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rrk+ ++tkeq   Le+ F+ +++++  ++  LA++l+L++rq+ vWFqNrRa+ k
  Medtr4g126900.1  86 RRKKLRLTKEQSSMLESTFKLHNTLNPVQKIALADQLSLKTRQIEVWFQNRRARTK 141
                      79999*************************************************98 PP
2HD-ZIP_I/II114.75.4e-3787174188
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      +kk+rl+keq+++LE++F+ +++L+p +K +la +L l++rq++vWFqnrRARtk+kq+E+dye Lk+++++l++en+rL+ke +eL+
  Medtr4g126900.1  87 RKKLRLTKEQSSMLESTFKLHNTLNPVQKIALADQLSLKTRQIEVWFQNRRARTKLKQIEVDYELLKKHCQNLSDENKRLKKELQELK 174
                      69************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-1872144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1673141IPR009057Homeodomain-like
PROSITE profilePS5007117.13583143IPR001356Homeobox domain
SMARTSM003893.1E-1585147IPR001356Homeobox domain
PfamPF000461.2E-1486141IPR001356Homeobox domain
CDDcd000861.76E-1291144No hitNo description
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
SMARTSM003401.7E-10143186IPR003106Leucine zipper, homeobox-associated
PfamPF021832.6E-8143174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MESDDECNTG LCLGLGMGAT KVKKQKLVNK PVIAPCFDLA FELCSKGEPM NVHNNNKGER  60
INLERHQYYQ NVTCSTDSDN NNNNDRRKKL RLTKEQSSML ESTFKLHNTL NPVQKIALAD  120
QLSLKTRQIE VWFQNRRART KLKQIEVDYE LLKKHCQNLS DENKRLKKEL QELKVVGQFP  180
LCPQRLSSKP VVTHSTLCSS CEQKPLKHNE DQKNNLLIDG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g126900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1418641e-127AC141864.7 Medicago truncatula clone mth2-21o24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610006.11e-162homeobox-leucine zipper protein HAT22
SwissprotP466047e-42HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLG7JT791e-160G7JT79_MEDTR; Homeobox associated leucine zipper protein
STRINGAES922031e-161(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.14e-35homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]