PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g128190.1
Common NameMTR_4g128190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 240aa    MW: 27773.3 Da    PI: 8.423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g128190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.51e-105396145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +g++++eE  +  + ++ +G   W++ a++++ gR+++++k++w+
  Medtr4g128190.1 53 KGPFSEEEKTKVFRFFNNFGEFKWSKLAQELP-GRSDNDIKNFWN 96
                     79******************99**********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.273847IPR017877Myb-like domain
SuperFamilySSF466893.91E-171095IPR009057Homeodomain-like
SMARTSM007173.51249IPR001005SANT/Myb domain
CDDcd001674.00E-41547No hitNo description
Gene3DG3DSA:1.10.10.601.7E-62750IPR009057Homeodomain-like
PROSITE profilePS5129417.57648103IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-1951101IPR009057Homeodomain-like
SMARTSM007171.2E-1052101IPR001005SANT/Myb domain
PfamPF002491.2E-95396IPR001005SANT/Myb domain
CDDcd001679.84E-95596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSSSSDTNKG LKKGKWSKEE DEMLKVSRNA GLIRCGKSCR LRWYNHLRPD VKKGPFSEEE  60
KTKVFRFFNN FGEFKWSKLA QELPGRSDND IKNFWNARKR KLEKRMSPFP DKMELNDELN  120
KSGSNSQQVK DSQDDEFNIP QVKFTYGYGI RSMLGEYPQI PPPMETQYQM SESSSPYKSG  180
SLKSMFYRQE NWEGFDASRV HSSELNLVDE KGKKPISLKD DVEANLDDLM DPCLLIDFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-18111012103C-Myb DNA-Binding Domain
1msf_C5e-18111012103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g128190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1249722e-49AC124972.41 Medicago truncatula clone mth2-24j4, complete sequence.
GenBankAC1308032e-49AC130803.61 Medicago truncatula clone mth2-10g3, complete sequence.
GenBankCR9541852e-49CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615031.12e-86transcription factor MYB101
TrEMBLG7JVG11e-175G7JVG1_MEDTR; Myb DNA-binding domain protein
STRINGAES923201e-176(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15637211
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.13e-33myb domain protein 81
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]