PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g128340.1
Common NameMTR_4g128340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 170aa    MW: 19115.8 Da    PI: 7.4398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g128340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  Medtr4g128340.1 47 FSCNYCQRKFYSSQALGGHQNAH 69
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.2E-64374No hitNo description
PROSITE profilePS5015711.0944774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MNNFHPNTFL HLNQPDNENI HHLNLDLVLE PSSSSSSSSS SMEQRIFSCN YCQRKFYSSQ  60
ALGGHQNAHK LERTLAKKSR EMSSAMQSSY AELPEHPSNF STNYHLGSHG NAHLDNNYRQ  120
GHVMRHGGRK DQFSYGNSKE GGASWSRGYN SNSENVQEDI SQLDLSLRL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.214880.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g128340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610140.21e-122zinc finger protein 2
SwissprotQ392612e-29ZFP2_ARATH; Zinc finger protein 2
TrEMBLG7JVH81e-121G7JVH8_MEDTR; Putative transcription factor C2H2 family
STRINGAES923371e-120(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.18e-31zinc finger protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]