PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g130270.1
Common NameMTR_4g130270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 360aa    MW: 41064.1 Da    PI: 5.3166
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g130270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-1549108155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Medtr4g130270.1  49 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDNEETAAHAYDLAALKYWG 108
                      57*******************999955656446*************************98 PP
2AP251.13.4e-16151202155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Medtr4g130270.1 151 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1749118IPR016177DNA-binding domain
PfamPF008474.8E-1249108IPR001471AP2/ERF domain
CDDcd000183.05E-1949118No hitNo description
Gene3DG3DSA:3.30.730.103.1E-1650117IPR001471AP2/ERF domain
PROSITE profilePS5103220.0250116IPR001471AP2/ERF domain
SMARTSM003805.6E-2650122IPR001471AP2/ERF domain
PRINTSPR003674.1E-65162IPR001471AP2/ERF domain
CDDcd000187.27E-24151212No hitNo description
PfamPF008473.4E-12151202IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18151212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-18152211IPR001471AP2/ERF domain
PROSITE profilePS5103218.334152210IPR001471AP2/ERF domain
SMARTSM003807.6E-25152216IPR001471AP2/ERF domain
PRINTSPR003674.1E-6192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAKKSQKQIE KDDNASNDND NLNPSNTVTT KAKRTRKSVP RTSPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNESQNKK GRQVYLGAYD NEETAAHAYD LAALKYWGQD TIINFPLSNY  120
QKELIEMESQ SREEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG KVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLKP NNNNNDDNNK SNINLCDINS  240
NSSANDSNSN EELEFSLVDN EISLNNSIDE ATLVQPRPTS ATSALELLLQ SSKFKEMVEM  300
ASMTSNVSTT LESDQLSQCA FPDDIQTYFE YENFNDTMLE DLNSIMPTFH YDFEGAEVL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g130270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267840.0AC126784.11 Medicago truncatula chromosome 8 clone mth2-36b12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610261.20.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLG7JFH50.0G7JFH5_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGAES924580.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-99ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]