PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g130900.1
Common NameMTR_4g130900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 498aa    MW: 53579.4 Da    PI: 6.702
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g130900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61.1e-22186243259
                      --SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+nWrKYGqK+vk+ +  +rsYYrCt+++C++kk +e+ ++ ++v+e++Y++eH h+
  Medtr4g130900.1 186 SDGFNWRKYGQKQVKSPTtGSRSYYRCTQSNCCAKK-IECWDHSGHVIETVYKSEHSHD 243
                      7**************975169*************98.*********************7 PP
2WRKY962.6e-30360416359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k+ve++ +  ++v+itY+g H+h+
  Medtr4g130900.1 360 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHVETAVDSSDAVIITYKGVHDHD 416
                      9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-19180245IPR003657WRKY domain
SuperFamilySSF1182903.66E-18181245IPR003657WRKY domain
SMARTSM007741.6E-20185244IPR003657WRKY domain
PROSITE profilePS5081115.399186245IPR003657WRKY domain
PfamPF031063.9E-16187243IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-31343418IPR003657WRKY domain
PROSITE profilePS5081131.846353418IPR003657WRKY domain
SuperFamilySSF1182904.58E-27354418IPR003657WRKY domain
SMARTSM007749.1E-35358417IPR003657WRKY domain
PfamPF031061.1E-23360415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAEHRVSEAL PVGPTQLPPE QQKAQEIKEP VGESPLATQS QKSELPSSDE NSNSETLIAF  60
PSSVLDQPSF DVQGIPDTLS SVAKSEIKET VGPPENEKEV AKSEAAQEPS AQAEYQIQVT  120
VSLTPPSELS PNSVAKSFSS VPSPTIQIQN MSPPNVSNTP VAEVNKKNTS GGRALSSVSV  180
PRTPSSDGFN WRKYGQKQVK SPTTGSRSYY RCTQSNCCAK KIECWDHSGH VIETVYKSEH  240
SHDPPRKISS IRESKFAPSN EPTAENSVLV KPADALKDSD PSTSSKAQEE TPCSSDKKLQ  300
NSSDINGNGK IVLNEEHVDE PDPKRRKDKG DLVHSDSPVK PEKKPKFVVH AAGDVGISGD  360
GYRWRKYGQK MVKGNPHPRN YYRCTSAGCP VRKHVETAVD SSDAVIITYK GVHDHDTPVP  420
KKRHGPPSAP LVAAAAPASM NNLQCPPSAP LVADAAPASL NNLQLSKPDS PQNQKISTQW  480
SVDTEGELTG EAKDPWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-24346418274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.9700.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g130900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1340590.0BT134059.1 Medicago truncatula clone JCVI-FLMt-18C20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610322.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 32
SwissprotP595831e-106WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLG7JGQ20.0G7JGQ2_MEDTR; WRKY family transcription factor
STRINGAES925190.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-97WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]