PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g131030.1
Common NameMTR_4g131030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24177.8 Da    PI: 5.7617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g131030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.41.4e-211257449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ++   rqvtfskRr+g++KKA+ELS+LC++e+a+++fs+ ++ y +
  Medtr4g131030.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSPGNRPYSF 57
                     56678**********************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.128161IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-19323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-251257IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRRKIEIEI VKDPNTRQVT FSKRRTGLFK KANELSILCG VEIAIVVFSP GNRPYSFGHP  60
GINVVAAKYL QQEPELSDSL GNPSSDAPDI EKLNLKLVEA SSDAPGIEKL NLELTEVLTQ  120
IQEGEKQNET HDEILKQDNV MKLSELKELR DSYKELHDLV KLRLSDIEIS VCMMLLAQDP  180
VVGIKEKSII SACLSETLFG MSHTVKTKQE RKQYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-17174175Myocyte-specific enhancer factor 2B
1tqe_Q5e-17174175Myocyte-specific enhancer factor 2B
1tqe_R5e-17174175Myocyte-specific enhancer factor 2B
1tqe_S5e-17174175Myocyte-specific enhancer factor 2B
6c9l_A5e-17174175Myocyte-specific enhancer factor 2B
6c9l_B5e-17174175Myocyte-specific enhancer factor 2B
6c9l_C5e-17174175Myocyte-specific enhancer factor 2B
6c9l_D5e-17174175Myocyte-specific enhancer factor 2B
6c9l_E5e-17174175Myocyte-specific enhancer factor 2B
6c9l_F5e-17174175Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g131030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221600.0AC122160.21 Medicago truncatula chromosome 8 clone mth2-23d6, complete sequence.
GenBankAC1595370.0AC159537.24 Medicago truncatula chromosome 8 clone mth2-188k3, complete sequence.
GenBankAC1691200.0AC169120.12 Medicago truncatula chromosome 8 clone mth2-84o2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636808.11e-135agamous-like MADS-box protein AGL29
TrEMBLG7JGR61e-155G7JGR6_MEDTR; MADS-box transcription factor family protein
STRINGAES925331e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-39AGAMOUS-like 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]