PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g131160.2
Common NameMTR_4g131160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 404aa    MW: 43023.6 Da    PI: 6.5082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g131160.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12210255555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Medtr4g131160.2 210 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 255
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17203264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-13203259No hitNo description
PROSITE profilePS5088817.39205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16207264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9210255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MQSLNSLFNS SSSSSSEIPI PLQSQIQINN NNNNHNDTFN HHDDFLKQIL STNLPPSWNT  60
LDPNHNKPLL WDPNSDENVT FPNYDEQHNN LASKFRNHQI TDKTAAALML LTADSGGLLH  120
MPADFDSSQN DVVNTSSLLQ AAGDASVQAL FNGFSGSLHG VAQPHHFQPP QGQSFGSGSV  180
SATNQAPASG APAQPRQKVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK  240
ASMLDEIIDY VKFLQVQVKV LSMSRLGGAG AVAPLVADMS SEGVSDCVQT NGNGGVHPRN  300
PKTASSSNES LTMTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHTRNPL  360
INAANNNING SSNPITASNG DGPSSPGMSV NSIVKDANSA SKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.93620.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g131160.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1517270.0AC151727.27 Medicago truncatula chromosome 8 clone mth2-25p23, complete sequence.
GenBankAC1691200.0AC169120.12 Medicago truncatula chromosome 8 clone mth2-84o2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610347.20.0transcription factor bHLH82 isoform X1
SwissprotQ9ZUG91e-89BH066_ARATH; Transcription factor bHLH66
TrEMBLG7JGS80.0G7JGS8_MEDTR; BHLH transcription factor
STRINGAES925440.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-69LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]