PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g134460.1
Common NameMTR_4g134460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 435aa    MW: 48628.1 Da    PI: 6.6152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g134460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.8e-50551802128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++
  Medtr4g134460.1  55 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTE 147
                      79***************************.89***************8778899**************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + + +glkktLvfy+g+apkg +t+W+m+eyrl
  Medtr4g134460.1 148 NFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 180
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5553200IPR003441NAC domain
PROSITE profilePS5100555.85854201IPR003441NAC domain
PfamPF023654.7E-2556180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAIAAATSSP NMSSMSLSHE DGTSNDNINK GATATVTVVD DDDDADDDHE HDVVMPGFRF  60
HPTEEELVEF YLRRKVEGKR FNVELITFLD LYRYDPWELP ALAAIGEKEW YFYVPRDRKY  120
RNGDRPNRVT TSGYWKATGA DRMIRTENFR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL  180
PQHETERYQK GEISLCRVYK RAGVEDHPSL PRCLPITRPS SSSSSRGTTA SHSDKNKQQN  240
EILGMGFVVG QSPKTIDDHI VNKMEGSSSG GNSDHVTTTL GLSKYSNTPP PTNYRSEEEE  300
GLMIMQQQQH QPRHLVQYSA AGNSLLVSAG GGGGVIFPVS ASAAAAVSCS NTATSAAMMM  360
DDLNRLVSYQ QQQYCYNVQN PHLNHPNPNH LSTLLMQPML PNQFPTTFSD RLWDWNPIPE  420
DHNHPNSSNN TSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-555620119165NO APICAL MERISTEM PROTEIN
1ut4_B7e-555620119165NO APICAL MERISTEM PROTEIN
1ut7_A7e-555620119165NO APICAL MERISTEM PROTEIN
1ut7_B7e-555620119165NO APICAL MERISTEM PROTEIN
4dul_A7e-555620119165NAC domain-containing protein 19
4dul_B7e-555620119165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.103360.0glandular trichome| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g134460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0527200.0BT052720.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-G-1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458699.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-109NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A072UTQ90.0A0A072UTQ9_MEDTR; NAC transcription factor-like protein
STRINGGLYMA17G00650.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-109NAC domain containing protein 35
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]