PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g005110.1
Common NameMTR_5g005110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 332aa    MW: 36923.9 Da    PI: 5.2791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g005110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-102402801055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Medtr5g005110.1 240 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 280
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-14230295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-13236293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.92E-12239284No hitNo description
PfamPF000104.1E-8240280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEPTGLISQE WTSLSGLYTA EESDFMNQLL GNSSFSQHFY QNSNFGTETT FWPPYDSTIV  60
TAQVPSSTSD TSNLFPTTSC FNNNPVTTFD YISMGLSIDY SKFTPCTTQS DEQVLANKNL  120
QARKTEREIL VSEPEEDKTT STENSGKRSR SSNEVPKNKR NVKCRKMIRC ASISTEENTS  180
TGSQDQTLSG YCSEDESNSS HEPRGRESSS LSLNDSAAKL SGKSRSSRGP ATDPQSLYAR  240
KRRERINERL KILQNLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD TWMYSPIAYN  300
GMNIGLELGI TPTKVTKDMH NNIPIKENAA L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.68422e-70root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g005110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317300.0CR931730.1 Medicago truncatula chromosome 5 clone mth2-17o15, COMPLETE SEQUENCE.
GenBankFP1022180.0FP102218.3 Medicago truncatula chromosome 5 clone mtb-16p16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610621.10.0transcription factor bHLH84
TrEMBLG7K0X10.0G7K0X1_MEDTR; Putative transcription factor bHLH family
STRINGAES935790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-62bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]