PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g005110.2
Common NameMTR_5g005110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 273aa    MW: 30378.3 Da    PI: 5.4735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g005110.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.8e-062402591029
                      HHHHHHHHHHHHHHHCTSCC CS
              HLH  10 rrRRdriNsafeeLrellPk 29 
                      r+RR+riN+++  L+ l+P+
  Medtr5g005110.2 240 RKRRERINERLKILQNLVPN 259
                      9******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.623230272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-6230261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-4235260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-4239264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEPTGLISQE WTSLSGLYTA EESDFMNQLL GNSSFSQHFY QNSNFGTETT FWPPYDSTIV  60
TAQVPSSTSD TSNLFPTTSC FNNNPVTTFD YISMGLSIDY SKFTPCTTQS DEQVLANKNL  120
QARKTEREIL VSEPEEDKTT STENSGKRSR SSNEVPKNKR NVKCRKMIRC ASISTEENTS  180
TGSQDQTLSG YCSEDESNSS HEPRGRESSS LSLNDSAAKL SGKSRSSRGP ATDPQSLYAR  240
KRRERINERL KILQNLVPNG TKVTFFLNDI QQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g005110.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317300.0CR931730.1 Medicago truncatula chromosome 5 clone mth2-17o15, COMPLETE SEQUENCE.
GenBankFP1022180.0FP102218.3 Medicago truncatula chromosome 5 clone mtb-16p16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610621.10.0transcription factor bHLH84
TrEMBLA0A072UNA90.0A0A072UNA9_MEDTR; Transcription factor
STRINGAES935790.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-29ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]