PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g006530.1
Common NameMTR_5g006530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CPP
Protein Properties Length: 779aa    MW: 85345.1 Da    PI: 5.5711
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g006530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.96.2e-16487524340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Medtr5g006530.1 487 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 524
                      89**********************************96 PP
2TCR512.9e-16571609139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Medtr5g006530.1 571 RHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNA 609
                      589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.0E-17485526IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.811486611IPR005172CRC domain
PfamPF036381.5E-11488523IPR005172CRC domain
SMARTSM011145.6E-17571612IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11573609IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MNMNINMDTP ERNQINTTLS KFEDSPVFNY INNLSPIKPV KSAHITQTFN SLSFSSPPSV  60
FASPHVTSLK ESRFLRRHNQ PEESKAKDSY EDVNKLYSND GAIEEPTLSR HNSRELDESA  120
EQLISVGDVS IELSNEETKF TDELPQSLQY NCGSPGYDPT LCGDEDNTLL ELSGEAVSDD  180
AYPQGGCVTD SVEAELHFQG TSQIDRKGES SDCDWDGLIP NSANMLIEAE AFKGMMQKSS  240
GSPIRLSDFV PLLQQCTRND DQKIYMVDSV ASSSQHEIEN HCSELVAATD TDHTQDNLAN  300
GSSMTGNSNE KMDNELVSVT HRGIRRRCLD FEMASVRRKI ADDNSNTNSS TQQSETMNAA  360
NENQLLPAKR NANSQRCILP GIGLHLNALA SVKDHKGKEI ENLTSGRQLS LTSSTSLLLS  420
ACQEHQHLSV VSVSISSERE LVPSDNGVQP TEDCPQPIAY MATEDFNQNS PKKKRRKSEP  480
VGEIEGCKRC NCKKSKCLKL YCECFAAGVY CIEPCSCQEC FNKPIHEDTV LQTRKQIESR  540
NPLAFAPKVI RSADSVPETG IDPNKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIS  600
CRCEGCKNAF GRKDGSASIG IEGETEEETE TSDKGAEEKA IQKTEIQNIE DHPDSAGVST  660
PLRLSRSLLP MPFSSKGKPP RSFVTTLTGS GYLTSQKLAK PNSLWSQSKT FQTVPDDEMP  720
EILRGGDSSP IACIKTSSPN GKRISSPNCE MGSSPSRRGG RKLILQSIPS FPSLTHHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1748860812120Protein lin-54 homolog
5fd3_B4e-1748860812120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471475KKKRR
2471476KKKRRK
3472476KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.74340.0leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g006530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1353200.0AC135320.6 Medicago truncatula clone mth2-28e9, complete sequence.
GenBankAC1468520.0AC146852.15 Medicago truncatula clone mth2-58k21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610744.20.0protein tesmin/TSO1-like CXC 2
TrEMBLG7K3P90.0G7K3P9_MEDTR; Putative transcription factor Tesmin family
STRINGAES937020.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-142TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]