PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g006530.2
Common NameMTR_5g006530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CPP
Protein Properties Length: 555aa    MW: 60560.2 Da    PI: 7.7931
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g006530.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54.1e-16263300340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Medtr5g006530.2 263 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 300
                      89**********************************96 PP
2TCR51.61.9e-16347385139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Medtr5g006530.2 347 RHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNA 385
                      589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.0E-17261302IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.811262387IPR005172CRC domain
PfamPF036381.0E-11264299IPR005172CRC domain
SMARTSM011145.6E-17347388IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.4E-12349385IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MLIEAEAFKG MMQKSSGSPI RLSDFVPLLQ QCTRNDDQKI YMVDSVASSS QHEIENHCSE  60
LVAATDTDHT QDNLANGSSM TGNSNEKMDN ELVSVTHRGI RRRCLDFEMA SVRRKIADDN  120
SNTNSSTQQS ETMNAANENQ LLPAKRNANS QRCILPGIGL HLNALASVKD HKGKEIENLT  180
SGRQLSLTSS TSLLLSACQE HQHLSVVSVS ISSERELVPS DNGVQPTEDC PQPIAYMATE  240
DFNQNSPKKK RRKSEPVGEI EGCKRCNCKK SKCLKLYCEC FAAGVYCIEP CSCQECFNKP  300
IHEDTVLQTR KQIESRNPLA FAPKVIRSAD SVPETGIDPN KTPASARHKR GCNCKKSNCL  360
KKYCECYQGG VGCSISCRCE GCKNAFGRKD GSASIGIEGE TEEETETSDK GAEEKAIQKT  420
EIQNIEDHPD SAGVSTPLRL SRSLLPMPFS SKGKPPRSFV TTLTGSGYLT SQKLAKPNSL  480
WSQSKTFQTV PDDEMPEILR GGDSSPIACI KTSSPNGKRI SSPNCEMGSS PSRRGGRKLI  540
LQSIPSFPSL THHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1726438412120Protein lin-54 homolog
5fd3_B2e-1726438412120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251KKKRR
2247252KKKRRK
3248252KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.74340.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g006530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610744.20.0protein tesmin/TSO1-like CXC 2
SwissprotQ9LUI31e-132TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLG7K3P90.0G7K3P9_MEDTR; Putative transcription factor Tesmin family
STRINGAES937020.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-127TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  3. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  4. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]