PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g008280.1
Common NameMTR_5g008280
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 388aa    MW: 41826 Da    PI: 9.148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g008280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000814870123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C++ Fs++  L  H++ H
  Medtr5g008280.1 48 FSCLFCKRKFSTSQALGGHQNAH 70
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
SuperFamilySSF576673.98E-54676No hitNo description
PROSITE profilePS5015711.1774875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MIRFADQRCQ STVFFSNIQV GSASCFSKNK EEKSEKNNDE KNLNLRSFSC LFCKRKFSTS  60
QALGGHQNAH KAERALKKQR KLRYDLGLGE PHFNLYFSYP NSFFTSPYYR KLGVRVESMI  120
QNPSYISPGI TSHSFGPFGY NNGALGLQEM LNPSLVSLRN MEGSNNNSGV GILGIGGGTT  180
SSPFGYSNGT LGLQEMLNPS FVSLKNMEGS NSTSGVGVLG IGGGTASRIE DSKNNKICGI  240
LKCGDSFKNV ASSSNSIIDK KNPRIIPNGF GPFGYSNGAL CLQEMLNPSL PLVSLRNMES  300
SYNGAGILGI GGGTTSRIED DTNNKIGAIF KWGDSSKHVA TSSNAIIKNK NIVDATTTKD  360
DIDMSKFKAE EESSNYDSCG LDLSLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g008280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263940.0CU326394.2 Medicago truncatula chromosome 5 clone mth2-12h14, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458912.12e-77myb-like protein A
TrEMBLG7K7V20.0G7K7V2_MEDTR; Putative transcription factor C2H2 family
STRINGAES938570.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.16e-15C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]