PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g008550.1
Common NameMTR_5g008550
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 194aa    MW: 21818.3 Da    PI: 4.8001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g008550.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-152070256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      y GVr +k +g++v+eIr+p   gk+ r++lg++  +++Aa+a++ a+  l+g+
  Medtr5g008550.1 20 SYIGVRKRK-WGKFVSEIREP---GKKSRIWLGSYEEPQMAAAAYDIAAFHLKGH 70
                     699***999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-272078IPR001471AP2/ERF domain
SMARTSM003806.1E-282083IPR001471AP2/ERF domain
PROSITE profilePS5103220.022077IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-192078IPR016177DNA-binding domain
PfamPF008474.2E-92070IPR001471AP2/ERF domain
CDDcd000185.54E-162178No hitNo description
PRINTSPR003673.0E-102132IPR001471AP2/ERF domain
PRINTSPR003673.0E-105979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEESNNMQEQ EHANVTPPTS YIGVRKRKWG KFVSEIREPG KKSRIWLGSY EEPQMAAAAY  60
DIAAFHLKGH AAKLNFPDMI EKLPMPASSK AEDIRVAAQQ GALQFKRRPS SSSSEGGVNS  120
INISDSNSNN DSVVPARVGL SPSQIQAINE APLDSPKMWM QMFGFQFDEY RNYDNNVLEL  180
SEWEEIQYES LWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-152177360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-152177663ATERF1
3gcc_A1e-152177663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g008550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263940.0CU326394.2 Medicago truncatula chromosome 5 clone mth2-12h14, COMPLETE SEQUENCE.
GenBankCU4695530.0CU469553.2 Medicago truncatula chromosome 5 clone mth2-57m18, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610923.11e-142ethylene-responsive transcription factor ERF021
TrEMBLG7K7X61e-140G7K7X6_MEDTR; Ethylene response factor
STRINGAES938811e-141(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-47ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]