PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g008790.1
Common NameMTR_5g008790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 163aa    MW: 18322.4 Da    PI: 4.6421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g008790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-161665154
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     +++kGVr++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+
  Medtr5g008790.1 16 KKFKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYATPEAAAVAHDVAFYCLK 65
                     59*****998.**********8...3.35*******************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.46E-261677No hitNo description
Gene3DG3DSA:3.30.730.101.1E-251777IPR001471AP2/ERF domain
PROSITE profilePS5103221.0081776IPR001471AP2/ERF domain
SMARTSM003802.7E-251782IPR001471AP2/ERF domain
PfamPF008471.1E-91763IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-171777IPR016177DNA-binding domain
PRINTSPR003672.0E-81829IPR001471AP2/ERF domain
PRINTSPR003672.0E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MNWSTSTTST SDDSNKKFKG VRRRKWGKWV SEIRVPGTQE RLWLGTYATP EAAAVAHDVA  60
FYCLKRPSTL DKLNFPDILS SYCIQQRDNL MSPRSVQKVA SDVAMDVDAR NIASQATTLP  120
EMNHMDNVVP DDVFWWDGLG DDQGVSCSQQ QEDLNISIED YL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g008790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4695520.0CU469552.2 Medicago truncatula chromosome 5 clone mth2-190a9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610945.11e-119ethylene-responsive transcription factor ERF020
TrEMBLG7K9781e-117G7K978_MEDTR; AP2 domain class transcription factor
STRINGAES939031e-118(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.17e-42ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]