PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g009080.1
Common NameMTR_5g009080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 482aa    MW: 54037.9 Da    PI: 5.5042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g009080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4654.1e-142534781374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA++v+sg+le+a+++L+++s+la+pdgd+mqR+aayfteALa r+++++++l +al++++      see++++k+f+e++P+lk++
  Medtr5g009080.1  53 LIHLLITCANHVASGSLENANTTLEQISQLATPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRII--MLSEEIMVQKFFFELFPFLKVA 144
                      689*************************************************************988886..69******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI+e++ege++vHiiD+++ +++QW+aLlq L++Rpegpp+lRiTg+++    +ke le++g++L++ Ae+l++pf+fn+ v ++le+
  Medtr5g009080.1 145 YILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQ----QKEVLEQMGHKLSEEAEKLDIPFQFNP-VLSKLEN 233
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll.............................................................desvsle 221
                      l++++Lrvk+gEala++++lqlh+ll                                                             ++s+s+ 
  Medtr5g009080.1 234 LDFDKLRVKTGEALAISSILQLHSLLalddesssrrktpilsrnsnglhlqkamlmnqntslgdllekdmvngyspspdstsssspaSSSASM- 326
                      *********************************************************************************998864333333. PP

             GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                       + +++L++++slsPkv+vv+eq+++hn+++++er+leal+ y+alfd+le++++r+s er kvE++l+g+ei+n++acegaer+erhe+l kW
  Medtr5g009080.1 327 -NVESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKW 419
                      .3599***************************************************************************************** PP

             GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +rl+++GF++vpls++ + qa++ l+ ++ +gyr+ ee+g++v +W+dr+L+s++aWr
  Medtr5g009080.1 420 FMRLDSCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVTCWQDRSLFSTTAWR 478
                      **********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.13927458IPR005202Transcription factor GRAS
PfamPF035141.4E-13953478IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MESMLQEEGS SSVTCSPLQL FSMMSVSPNI GGIGSPYPWL SRELKSEERG LYLIHLLITC  60
ANHVASGSLE NANTTLEQIS QLATPDGDTM QRIAAYFTEA LADRILKTWP GLHRALNSTR  120
IIMLSEEIMV QKFFFELFPF LKVAYILTNQ AIVESMEGEK MVHIIDLNAA EPAQWIALLQ  180
VLSARPEGPP HLRITGIHQQ KEVLEQMGHK LSEEAEKLDI PFQFNPVLSK LENLDFDKLR  240
VKTGEALAIS SILQLHSLLA LDDESSSRRK TPILSRNSNG LHLQKAMLMN QNTSLGDLLE  300
KDMVNGYSPS PDSTSSSSPA SSSASMNVES FLNALWSLSP KVMVVTEQDS NHNGSTLMER  360
LLEALYSYAA LFDCLESTVS RTSLERLKVE KMLFGEEIKN IIACEGAERK ERHEKLDKWF  420
MRLDSCGFGN VPLSYYGMLQ ARRFLQSYGC EGYRMREENG CVVTCWQDRS LFSTTAWRAR  480
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-624548010380Protein SCARECROW
5b3h_D7e-624548010380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g009080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335690.0AC233569.4 Medicago truncatula clone mth2-73i21, complete sequence.
GenBankCR9550080.0CR955008.2 Medicago truncatula chromosome 5 clone mte1-51b2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610972.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLG7K9A50.0G7K9A5_MEDTR; GRAS family transcription factor
STRINGAES939300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]