PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g010470.1
Common NameMTR_5g010470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 830aa    MW: 94573.9 Da    PI: 7.5724
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g010470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-13753148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W   Ede+l+ av ++G+++W++I++ +   +++kqck rw+ +l
  Medtr5g010470.1  7 KGVWKNTEDEILKAAVMKYGKNQWARISSLLV-CKSAKQCKARWYEWL 53
                     789*****************************.99**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.233157IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-18656IPR009057Homeodomain-like
SMARTSM007171.2E-13655IPR001005SANT/Myb domain
PfamPF139211.8E-111070No hitNo description
CDDcd001674.53E-111053No hitNo description
SuperFamilySSF466891.26E-1633104IPR009057Homeodomain-like
CDDcd116592.69E-2455104No hitNo description
Gene3DG3DSA:1.10.10.601.3E-857102IPR009057Homeodomain-like
PROSITE profilePS5129411.18458105IPR017930Myb domain
SMARTSM007170.002358103IPR001005SANT/Myb domain
PfamPF118313.3E-48413627IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MSIMTKKGVW KNTEDEILKA AVMKYGKNQW ARISSLLVCK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKVMPTQ RRTISVGRTP SQCLERYEKL LDAACVKDGN YEPGDDPRKL  120
RPGGIDPNPE SKPPRPDPVD MDEDEKEMLS EACARLANTK GKKAKRKARE KQLEEAGRLA  180
SLQKKRELKA AGIDIRQRRR KRRGIDYNAE IPFEKRPPPG YFDVADEDRE VEQRFPTTIE  240
ELEGKRRIDV EAQLRKQDVA RNKIAERQDA PAAILHARKL NDPETVRKRS KLMLPPPQIS  300
DQELDEIAKF GYASDLVGSD ELTKGSSATR ALLPNYPQTP NQAMTPLRTP QRTPAGKGDA  360
IMMEAENLAR LRESQTLLLG GENPELHPSD FSGVTPKKKE IHIPSPLLTP SATPGSAGLT  420
PRSGMTPARD GFSFGMTPKG TPLRDELHIN EDMEMRDSAK LELRRQADMK KSLRSGLSSL  480
PQPKNEYQIV MQPIQEDAEE PEEKIEEDMS DRMAREKAEE EARQQALLRK RSKVLQRELP  540
TPPPASLELI RNSLIRADGD KSSFVPPTPI EQADEMIRKE LQALLEHDNA KYPLEEIEDE  600
MKSADQLMKD ETQYLCEAMG HGNDSLEDFV EAHTTCINDL MYFDTPLQNE FENMRSKLYD  660
GKEKMTRLEK KVTLLTQGYE WSWGLFKAAN MGELSQLFSA FVSLTPQVKK RSDCIFSNSV  720
VETPVFVEHI KADSWKWLPP RVRGGRGLYN SGYKHKNLHK NVAEDEHSNL QKTKTLKVIL  780
NIIRPKYPNE LHGKWVFILP SFSLLLFGVD VGDELFWIHL IRFDCTMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-17236904736Cell division cycle 5-like protein
5xjc_L1e-17236904736Cell division cycle 5-like protein
5yzg_L1e-17236904736Cell division cycle 5-like protein
5z56_L1e-17236904736Cell division cycle 5-like protein
5z57_L1e-17236904736Cell division cycle 5-like protein
5z58_L1e-17236904736Cell division cycle 5-like protein
6ff4_L1e-17236904736Cell division cycle 5-like protein
6ff7_L1e-17236904736Cell division cycle 5-like protein
6icz_L1e-17236904736Cell division cycle 5-like protein
6id0_L1e-17236904736Cell division cycle 5-like protein
6id1_L1e-17236904736Cell division cycle 5-like protein
6qdv_O1e-17236904736Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183202KKRELKAAGIDIRQRRRKRR
2196202QRRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.222990.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g010470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1022170.0FP102217.2 Medicago truncatula chromosome 5 clone mtrs-65h5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640850.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLG7KDD40.0G7KDD4_MEDTR; Pre-mRNA splicing factor component protein
STRINGAES940690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]