PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g010910.1
Common NameMTR_5g010910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 225aa    MW: 25410.8 Da    PI: 6.9251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g010910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1947103155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++k +++Wv+e r+p++  n+  + r++lg++ t+e+Aa+a++ a++ l+g
  Medtr5g010910.1  47 PVYRGVRRRK-NNKWVCEMRVPNNivNKnNKSRIWLGTYPTPEMAARAHDVAALTLKG 103
                      68*****999.8*********9777876556***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1447103IPR001471AP2/ERF domain
PROSITE profilePS5103221.70748111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2848113IPR001471AP2/ERF domain
SMARTSM003801.4E-2548117IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1948113IPR016177DNA-binding domain
PRINTSPR003672.2E-74960IPR001471AP2/ERF domain
CDDcd000184.52E-2649113No hitNo description
PRINTSPR003672.2E-77793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDFFMSSFGE YSDTSSSETS SSEVILASVN KPKKRAGRRV FKETRHPVYR GVRRRKNNKW  60
VCEMRVPNNI VNKNNKSRIW LGTYPTPEMA ARAHDVAALT LKGKSACLNF ADSAWRLRLP  120
ESNDATEIRR AAMEAAQLFA VEDKQCCVTV EDGVFMDMED SKNMLEAQVP VVSSEFEDMH  180
HLLLSIANEP LRSAPPSPTN YGSYNWGDME IFDTQLVSLW NFSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.231410.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g010910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465730.0AC146573.21 Medicago truncatula clone mth2-145j1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611155.11e-169dehydration-responsive element-binding protein 1E
SwissprotQ9LN869e-53DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLG7KDH81e-167G7KDH8_MEDTR; Dehydration-responsive element-binding protein
STRINGAES941131e-168(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-54ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  4. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]