PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g010940.1
Common NameMTR_5g010940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 230aa    MW: 25939.3 Da    PI: 7.4527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g010940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1952108155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++k +++Wv+e r+p++  n+  + r++lg++ t+e+Aa+a++ a++ l+g
  Medtr5g010940.1  52 PVYRGVRRRK-NNKWVCEMRVPNNivNKnNKSRIWLGTYPTPEMAARAHDVAALTLKG 108
                      68*****999.8*********9777876556***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1452108IPR001471AP2/ERF domain
SMARTSM003801.4E-2553122IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1953118IPR016177DNA-binding domain
PROSITE profilePS5103221.70753116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2853118IPR001471AP2/ERF domain
CDDcd000184.80E-2654118No hitNo description
PRINTSPR003672.3E-75465IPR001471AP2/ERF domain
PRINTSPR003672.3E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDFFMSSFSD YSDTSSSETA SSNRTSSSEV ILAPARPKKR AGRRVFKETR HPVYRGVRRR  60
KNNKWVCEMR VPNNIVNKNN KSRIWLGTYP TPEMAARAHD VAALTLKGKS ACLNFADSAW  120
RLRLPESNDA TEIRRAAMEA AQLFAVEDKQ CCVTVEDGVF MDMEDSKNML EAQVPVVSSE  180
FEDMHHLLLS IANEPLRSAP PSPTNYGSYN WGDMEIFDTQ LVSLWNFSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.231410.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00137DAPTransfer from AT1G12610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g010940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465730.0AC146573.21 Medicago truncatula clone mth2-145j1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611158.11e-172dehydration-responsive element-binding protein 1E
SwissprotQ9LN863e-54DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLG7KDI11e-171G7KDI1_MEDTR; Dehydration-responsive element-binding protein
STRINGAES941161e-172(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-47ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  4. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]