PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g013010.2
Common NameMTR_5g013010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 208aa    MW: 23593.2 Da    PI: 6.5256
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g013010.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18135187254
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      rk+ ++tk+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+
  Medtr5g013010.2 135 RKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRAR 187
                      788899**********************************************8 PP
2HD-ZIP_I/II81.31.4e-26135188154
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                      +kk+rl+k+q+ +LEesF+e+++L+p++K +la++Lgl++rqv+vWFqnrRAR 
  Medtr5g013010.2 135 RKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARL 188
                      69***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046189.2E-334109IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466892.82E-17126188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-17126185IPR009057Homeodomain-like
PROSITE profilePS5007116.39131191IPR001356Homeobox domain
SMARTSM003899.5E-15133195IPR001356Homeobox domain
PfamPF000469.3E-16135187IPR001356Homeobox domain
CDDcd000863.50E-14135188No hitNo description
PRINTSPR000311.4E-5162171IPR000047Helix-turn-helix motif
PRINTSPR000311.4E-5171187IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSIEKEDFGL SLSLSFPQNP PNPQYLNLMS SSTHSYSPST FNPQKPSWND VFTSSDRDSE  60
TCRIEERPLI LRGIDVNRLP SGADCEEEAG VSSPNSTVSS VSGKRSEREV TGEDLDMERD  120
CSRGISDEED AETSRKKLRL TKDQSIILEE SFKEHNTLNP KQKLALAKQL GLRARQVEVW  180
FQNRRARLVH LTSRQYLKNR NTYSMHV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139SRKKLRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.15190.0flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g013010.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0521290.0BT052129.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611347.11e-134homeobox-leucine zipper protein HAT4
SwissprotP466003e-57HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A072UDF71e-151A0A072UDF7_MEDTR; Homeobox associated leucine zipper protein
STRINGAES943051e-134(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-38homeobox protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]