PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g013370.1
Common NameMTR_5g013370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 500aa    MW: 55329.8 Da    PI: 6.6706
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g013370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.52.8e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Medtr5g013370.1  7 CHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                     ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-11545No hitNo description
CDDcd002025.60E-17653No hitNo description
PfamPF003204.6E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.121740IPR000679Zinc finger, GATA-type
PfamPF139191.1E-9256344IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGKQGPCHHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAETDDFDDQ  60
KASRMKSISL NKNKEVNLLK RKQNHYNVVS GGLASDYNQG FHKAFDEDMS NRSSSGSALS  120
NSESCAQFGG TDASDLTGPS QSVVWDTTPT VPSKKRTCVG RAKQPSSVEK LTKDLCTILH  180
EQQSCFSESS DGDLLYESEA PMVSVEIGHG SVLIRHPSYV ARDEESEASS LSFDNGLYPM  240
SDAYSYSGAV LKSDKSQLER VQILGNHDSP LCLVDLNDVV NYEEFTRNLS YEEQQQLLKF  300
LPVVDTAKLP DGLKVMFSSS QFKENLTNFQ QLLAKGAFDI SLPEVKPEDC ETLKRYALNE  360
LSKSKWVEHY HNKRCKSRAE KSDVPGSSGI ASTNVANVKR MRDSRNQNFP EMKTIMRSPK  420
RIITKISYNP KSLFPLPPDA SSHLLDSFNF VEESSDQDLL LEVPSNNSFP QAELLHPTSI  480
FGAQASTSSS SAYSHFVNH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g013370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317350.0CR931735.1 Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611383.20.0GATA transcription factor 26
SwissprotQ8W4H11e-139GAT26_ARATH; GATA transcription factor 26
TrEMBLG7JYK70.0G7JYK7_MEDTR; GATA transcription factor-like protein
STRINGAES943410.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-141GATA transcription factor 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]