PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g014040.1
Common NameMTR_5g014040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 544aa    MW: 60776.8 Da    PI: 6.9001
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g014040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.5e-27311365156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++Wt eLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Medtr5g014040.1 311 KMKVDWTAELHKKFVKAVEQL-GIDQAIPSRILELMKVDGLTRHNVASHLQKYRMH 365
                      5689*****************.********************************96 PP
2Response_reg29.53.9e-11201261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+ + +++ ++ +r+ le+ +y +v ++ +  eal  +  +   +++ ++ ++++    G+++l++   + ++lp i+ + ++  +++ +++ 
  Medtr5g014040.1  20 VLLLEGDNNSASEIRTKLESMDY-NVSTFYNENEALSAISSSPkcFHVAIVEVSISCpDGGFKFLEN---A-KDLPTIMTSNSQCINTMMKCIA 108
                      67788888899999*********.***************999899************6667777654...3.4799999999999********* PP

                      TTESEEEESS--HHHHHH CS
     Response_reg  92 aGakdflsKpfdpeelvk 109
                      +Ga +fl+Kp ++++l +
  Medtr5g014040.1 109 LGAVEFLTKPLSEDKLKN 126
                      **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-1616146No hitNo description
SuperFamilySSF521723.7E-1516135IPR011006CheY-like superfamily
PROSITE profilePS5011021.43719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.4E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.98E-921131No hitNo description
PROSITE profilePS5129415.698308367IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-27309368IPR009057Homeodomain-like
SuperFamilySSF466893.05E-18310368IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-25311366IPR006447Myb domain, plants
PfamPF002491.4E-7314363IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MVCTANDLQG WKDFPKGLRV LLLEGDNNSA SEIRTKLESM DYNVSTFYNE NEALSAISSS  60
PKCFHVAIVE VSISCPDGGF KFLENAKDLP TIMTSNSQCI NTMMKCIALG AVEFLTKPLS  120
EDKLKNIWQH VVHKAFNAEA SALSESLKPV KESVESMLHL QTDNTLHEST ISIDLDKVSK  180
FSDNEHEHSA ASDKYPAPST PQLKQGARLV DDGDCHEQTN CLIEKESGEH DSGECKFVDT  240
SCENLNAESS PQPTKHLIKE EEDFAKGSKG EGGASLNPLN KNFLGDAGGN TSLNKTRVFN  300
DPCENKANRK KMKVDWTAEL HKKFVKAVEQ LGIDQAIPSR ILELMKVDGL TRHNVASHLQ  360
KYRMHKRQII HTDEDRKWPN RRDPMQRNYC MQRPIMAYPP YHSNHTFPPA PAYPMWGQHG  420
SQTAGVPIWS PPGYPLWQPT ESWHWKPYPP GVHVDAWGNP MLRPPQTHCI PYTQNMAGMH  480
NAKAVDYSYP AEEVVDKAVK EAINKPWLPL PIGLKPPSMD SVLDELSKQG IPFSKKSKGS  540
RPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16309369363ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.140790.0flower| glandular trichome| leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g014040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445160.0AC144516.5 Medicago truncatula clone mth2-28p22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640323.10.0two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-138APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLG7JZU40.0G7JZU4_MEDTR; Putative response regulator and transcription factor RR-A-type family
STRINGAES943980.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-140ARR-B family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]