PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g014400.1
Common NameMTR_5g014400, PALM1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 252aa    MW: 28033.8 Da    PI: 6.2217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g014400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001282104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C + F++   L  H+++H
  Medtr5g014400.1  82 YTCTFCRREFRSAQALGGHMNVH 104
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-679109No hitNo description
Gene3DG3DSA:3.30.160.608.6E-480107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15782109IPR007087Zinc finger, C2H2
PfamPF139121.9E-582105IPR007087Zinc finger, C2H2
SMARTSM003550.006682104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MATDIGLLSN MTQIQKSSQS QSQQHQPNPN SNTTTPPSPS SSTWMWNPKQ HQEQEDEDSW  60
EVRAFAEDTR NIMNTTWPPR SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LHQTQPPLNS  120
SHPSSPFINI PPQDLVANAG LCLLYHLPNP NNNAFASFNS SSPNGESPST FLSISSSTSY  180
PPNNLMMQMQ ACSPSFNFQV DNSARLINNS ISSFSSKVDQ QHATCTSIDD NGHEIEELDL  240
ELRLGNKPTP T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1377104229superman protein
2l1o_A2e-1377104229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g014400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9329630.0CR932963.2 Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE.
GenBankHM0384820.0HM038482.1 Medicago truncatula PALMATE-LIKE PENTAFOLIATA1 (PALM1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611481.10.0transcriptional regulator SUPERMAN
TrEMBLD7R6G30.0D7R6G3_MEDTR; PALMATE-LIKE PENTAFOLIATA1
STRINGAES944390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-39C2H2 family protein
Publications ? help Back to Top
  1. Chen J, et al.
    Control of dissected leaf morphology by a Cys(2)His(2) zinc finger transcription factor in the model legume Medicago truncatula.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(23): p. 10754-9
    [PMID:20498057]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]