PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g014640.1
Common NameMTR_5g014640
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 327aa    MW: 36634.3 Da    PI: 6.79
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g014640.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.9e-12153200355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r h ++Er+RR+++  +f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Medtr5g014640.1 153 REHVMAERKRREKLTRSFIALSAIVPGL-----KKMDKASVLGDATKYMKQLQ 200
                      5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.472150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16154214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-12155204No hitNo description
SMARTSM003534.7E-14156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMQIMSPIYV PELGMEDLNF FNQYTMDSLA SPTLFDNFGF HFDDNETTPN CFPVETHPDD  60
QTRPTKKIKT SITPSSQSSP QLISFEHSSS TPIASKQFYN LDYSDVKPKV GKRCNENKDF  120
LPALVSQGSY EDQKIFSNYD NQANQTRNTA QAREHVMAER KRREKLTRSF IALSAIVPGL  180
KKMDKASVLG DATKYMKQLQ ARLQTLEEQA EDNKKAGSTV QVKRSIIFTN NNDDDSNSNN  240
QPLPEIEVRV SSKDVLIKIQ CDKHSGRAAT VLGQLENLNL TVHSSTFLPF GNNIVDVTIV  300
AQMNKENCVT AKDLLGSIRQ ALIIQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.86600.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g014640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9329630.0CR932963.2 Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE.
GenBankCR9550040.0CR955004.2 Medicago truncatula chromosome 5 clone mte1-9e19, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611502.20.0transcription factor bHLH18
TrEMBLG7K1340.0G7K134_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES944600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-46bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]