PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g014890.1
Common NameMTR_5g014890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30351.2 Da    PI: 7.7676
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g014890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-18122176256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Medtr5g014890.1 122 RKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 176
                      788899***********************************************98 PP
2HD-ZIP_I/II1231.5e-39122210190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+keq+ lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +
  Medtr5g014890.1 122 RKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-S 210
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-18115179IPR009057Homeodomain-like
PROSITE profilePS5007117.313118178IPR001356Homeobox domain
SMARTSM003894.3E-15120182IPR001356Homeobox domain
CDDcd000863.25E-16122179No hitNo description
Gene3DG3DSA:1.10.10.606.4E-17122176IPR009057Homeodomain-like
PfamPF000461.2E-15122176IPR001356Homeobox domain
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
SMARTSM003404.1E-24178221IPR003106Leucine zipper, homeobox-associated
PfamPF021835.5E-10178211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGLNDQDSLH LVLGLSLNTS TTPKEITTTT PMNPYSTSNE PSLTLGLSGE SYNLISHKQA  60
TKGYGEELCR QTSSPHSVVN SSFSSGRVLQ VKRERDEEEE EVEEERVSSR VSDEDEDATN  120
ARKKLRLTKE QSLLLEESFK LHSTLNPKQK QALARQLNLR PRQVEVWFQN RRARTKLKQT  180
EVDCEFLKKC CETLTDENRR LKKELQELKS LKVAQPLYMP MPAATLSICP SCERLGRVAD  240
GGGGSNKITA FTMAPNTHFY NPFNNPSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.14410.0flower| glandular trichome| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g014890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368430.0BT136843.1 Medicago truncatula clone JCVI-FLMt-5I18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611524.10.0homeobox-leucine zipper protein HAT22
SwissprotP466046e-93HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLG7K1560.0G7K156_MEDTR; Homeobox associated leucine zipper protein
STRINGAES944820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]