PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g015070.1
Common NameMTR_5g015070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 545aa    MW: 61504.7 Da    PI: 7.1461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g015070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36.1e-16251310155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  ++ k+++lg ++ +e+Aa+a++ a++k++g
  Medtr5g015070.1 251 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqaRKgKQVYLGGYDIEEKAARAYDMAALKYWG 310
                      78*******************988886678446*************************98 PP
2AP242.81.3e-13355404355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeA +a++ a+ k++g
  Medtr5g015070.1 355 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAGEAYDIAAIKFRG 404
                      9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-12251310IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-17251320IPR016177DNA-binding domain
CDDcd000181.17E-21251318No hitNo description
Gene3DG3DSA:3.30.730.101.8E-16252319IPR001471AP2/ERF domain
PROSITE profilePS5103219.282252318IPR001471AP2/ERF domain
SMARTSM003801.0E-28252324IPR001471AP2/ERF domain
PRINTSPR003671.7E-6253264IPR001471AP2/ERF domain
CDDcd000182.07E-23353414No hitNo description
SuperFamilySSF541711.31E-16353413IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-17354412IPR001471AP2/ERF domain
PROSITE profilePS5103218.452354412IPR001471AP2/ERF domain
SMARTSM003803.5E-30354418IPR001471AP2/ERF domain
PfamPF008474.0E-8355404IPR001471AP2/ERF domain
PRINTSPR003671.7E-6394414IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MKFMENIEDT FNLNNQNSNI FGLSFSSQMN IGAPSTAAAE AVPTGFYYNP TPLHNYGYYG  60
HESEQVGLYS ALPIMHDGSQ AHAMGISHYG CSTKEEMQLS IDSIFDNQTS YHKPNNSNNL  120
NHVQENMSLL GSLVEHQKQQ LSCYTVLRND NVILDGPMKY QLEDNVQLPN IVEDEISDLR  180
RWVSRDFHAA SHAQDSKTCV LSASSSSQSS CVTSSQQTSP IDSASIDTMK RKHQMVNLKK  240
NQNQTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQA RKGKQVYLGG YDIEEKAARA  300
YDMAALKYWG PSTRINFPLE NYQKELEEMK KMTRLEYVAH LRRKSSGFSR GASMYRGVTR  360
HHQHGRWQAR IGRVAGNKDL YLGTFTTQEE AGEAYDIAAI KFRGANAVTN FDITKYDVEK  420
IISSPNLLSS KEARRNKKMD DVINNNKPAC AFEDIEEAIP IQKRCKIQPF SISNIYDEEV  480
EESNRMHMSN PSSIVTSLSS SREESPENMT SLPMLFGMTS TTSIMSSFSL PQMPLSVFAA  540
WTDA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g015070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0135170.0CU013517.1 Medicago truncatula chromosome 5 clone mth2-76o9, COMPLETE SEQUENCE.
GenBankCU1799040.0CU179904.1 Medicago truncatula chromosome 5 clone mth2-104i2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611540.20.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-123CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLG7K2E70.0G7K2E7_MEDTR; AP2 domain transcription factor, putative
STRINGAES944980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-119AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]