PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g015090.1
Common NameMTR_5g015090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 158aa    MW: 18397.8 Da    PI: 10.9946
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g015090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1391.7e-1259119363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+++ rr+++NRe+ArrsR RK+  +e+L++ v  +  eN++L + l+ l  ++ ++++e+
  Medtr5g015090.1  59 EDRKRRRMISNRESARRSRMRKQRHLENLRNQVNRFRVENRELNNGLQFLLYQCNRVRTEN 119
                      68999***************************************99999999999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-1357121IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-958116No hitNo description
PROSITE profilePS5021710.46159122IPR004827Basic-leucine zipper domain
PfamPF001701.3E-959119IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-1061111No hitNo description
CDDcd147022.42E-1662113No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MLSSLYSSDF TALDKSLTPW DFSNILSPIQ PTSPKLTSSS GSGEPNEKPV MDGSNRNMED  60
RKRRRMISNR ESARRSRMRK QRHLENLRNQ VNRFRVENRE LNNGLQFLLY QCNRVRTENE  120
WLRLERTMLG QKLSNISQNM VFQPFSSAWP CNIVTAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064RKRRR
27380RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g015090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0135170.0CU013517.1 Medicago truncatula chromosome 5 clone mth2-76o9, COMPLETE SEQUENCE.
GenBankCU1799040.0CU179904.1 Medicago truncatula chromosome 5 clone mth2-104i2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511808.22e-80bZIP transcription factor RISBZ3-like
TrEMBLG7K2E81e-110G7K2E8_MEDTR; BZIP transcription factor
STRINGAES944991e-111(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54353254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.14e-31basic leucine-zipper 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]