PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g015480.1
Common NameMTR_5g015480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 262aa    MW: 29579.6 Da    PI: 6.7909
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g015480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.13e-2370159190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fYneY++++GF +r+++ +ksk++g  t+r f+Cskeg+   +k++   +++ raetrtgC a++++++ +  gk++v++ +  HnH l 
  Medtr5g015480.1  70 EFYNEYSRKCGFGIRREYANKSKKDGVLTSRIFMCSKEGRCGGDKRD-YLTKEARAETRTGCLARMVISLVRkIGKYKVIDSVARHNHLLL 159
                      6*****************************************99999.9999******************9989**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1970160IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVETTHVEHD ANLHHSSPPL GTDNVNITSN PMVEGVEKLV NDIVEQAKEN IVSNVPHLEM  60
EFESEALAYE FYNEYSRKCG FGIRREYANK SKKDGVLTSR IFMCSKEGRC GGDKRDYLTK  120
EARAETRTGC LARMVISLVR KIGKYKVIDS VARHNHLLLP AEYVYMICSH RHISESQEQS  180
PIAHDGIHAW NGSHSGYGSH ALMANQTENA SPHLPLREAD NGSLHEIRIL TMEVYMRLGS  240
KCQSLFLLGD LYYILLITFW V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g015480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0276620.0CT027662.1 Medicago truncatula chromosome 5 clone mth2-106e24, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639282.11e-129protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLG7K2I40.0G7K2I4_MEDTR; FAR1 DNA-binding domain protein
STRINGAES945350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-19FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]