PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g015880.1

Common Name

MTR_5g015880

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 232aa MW: 25123.8 Da PI: 8.0919

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g015880.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.2	1.7e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q Medtr5g015880.1 2 SCNGCRVLRKGCSESCILRPCIqwidtPEAQGHATVFVAKFFGRADLMSFISNVPLPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6******************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Medtr5g015880.1 96 AAVETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.363	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPLPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPL PEFLGLDALA 120 STVDDSSEGE VTCNDARKIR DPNPKVRFMS SGGKRKRSGG EVLKLPATTD LNLRLTPQST 180 LTNGCRKEIR RPGTPSMNSE ESVTTVTCLE SGIGEDNYVH DGDRKVLNLF V*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.8620	0.0	leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g015880.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143032	0.0	BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003611614.1	1e-171	LOB domain-containing protein 39
Swissprot	Q9SZE8	2e-79	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	G7K3V2	1e-169	G7K3V2_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES94572	1e-170	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-80	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Medtr5g015880.1
Entrez Gene	11421111

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]