PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g017500.1
Common NameMTR_5g017500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 230aa    MW: 26637.3 Da    PI: 9.6395
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g017500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix582.4e-1822113286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                      Wt+qe+  Li+a+++++ +l+rg l++ +Weev+ ++           ++++ qC++k+e+l++r++ +k++     +  ss++++yf+ ++
  Medtr5g017500.1  22 WTHQETINLIRAYQDKWYSLKRGPLRGSQWEEVAVVVaarcgyDYNHPSKTALQCRHKMEKLRQRHRSEKRRLTATsSVASSRSWQYFRLMD 113
                      *************************************8666654445589***********************9985578899******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-1721115No hitNo description
SMARTSM005950.001729120IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MATDSPELTL SLPTKKPQPI PWTHQETINL IRAYQDKWYS LKRGPLRGSQ WEEVAVVVAA  60
RCGYDYNHPS KTALQCRHKM EKLRQRHRSE KRRLTATSSV ASSRSWQYFR LMDDLERGPL  120
PISVRPLSHN HPISDDSDGA AARSRSIHNI LNQKQRDETD EEEEDVMAKG LTAELRSFAE  180
RIIGLENMKM EMMKETERFR LEMENKRIRM ILESQWRIVD SIGKAFGSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.10060.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g017500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541930.0CR954193.3 Medicago truncatula chromosome 5 clone mth2-27a1, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611755.11e-171uncharacterized protein LOC11405483
TrEMBLG7K6Q61e-170G7K6Q6_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGAES947131e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.18e-35Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]