PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g018380.1
Common NameMTR_5g018380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 179aa    MW: 20951.1 Da    PI: 10.649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g018380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.33.1e-18123178259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+W KY +K++kgs   r Y  C++ +Cp+kk  +r+++dp+vv++tY+geH+h+
  Medtr5g018380.1 123 PDSYTWLKYDRKQIKGS--IRDYSECSTVNCPAKKYEDRARDDPTVVIVTYNGEHTHP 178
                      69**************9..69************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-16116178IPR003657WRKY domain
PROSITE profilePS5081118.223117178IPR003657WRKY domain
SuperFamilySSF1182901.96E-15119178IPR003657WRKY domain
SMARTSM007742.0E-9122178IPR003657WRKY domain
PfamPF031065.2E-13124178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MPTLRKRSRR EIVENPPQSE IEIPMKDHKN KKSEYELSRE ERIRENRERM GKLGLFDISL  60
SLKPNPPSRP TASKKPKSPV SLKPSRRSTR LQNVAPIRYT EEAINKRIYW KKKVKKTPSK  120
LMPDSYTWLK YDRKQIKGSI RDYSECSTVN CPAKKYEDRA RDDPTVVIVT YNGEHTHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g018380.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1490220.0BT149022.1 Medicago truncatula clone JCVI-FLMt-1G5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611835.11e-127probable WRKY transcription factor 65
TrEMBLG7K9F01e-125G7K9F0_MEDTR; Putative transcription factor WRKY family
STRINGAES947931e-126(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.23e-15WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]