PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g019650.1
Common NameMTR_5g019650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 222aa    MW: 26055.5 Da    PI: 6.5359
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g019650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.9e-2153107357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      k++++++eq+++Lee F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Medtr5g019650.1  53 KKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKN 107
                      56699************************************************95 PP
2HD-ZIP_I/II107.97.6e-3552139188
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      +kkr+ls+eqv++LEe+F +e+kLe+e+K +la eLgl+prqvavWFqnrRAR+k+k+lE++y +Lk+ +++   e++ Le++ +e +
  Medtr5g019650.1  52 NKKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYFSLKKIHESTILEKCLLETKLREQH 139
                      59******************************************************************************99877654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.34648108IPR001356Homeobox domain
SMARTSM003891.7E-1851112IPR001356Homeobox domain
SuperFamilySSF466892.57E-1852114IPR009057Homeodomain-like
CDDcd000861.19E-1453109No hitNo description
PfamPF000464.3E-1853107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-2155114IPR009057Homeodomain-like
PRINTSPR000313.3E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000313.3E-588104IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MNHQDQMMLM SQLFPACEYT QIISQQGEKK PKPRRKRSKK NKGGENSAND MNKKRKLSDE  60
QVNILEENFG NEHKLESEKK DRLAMELGLD PRQVAVWFQN RRARWKNKKL EEEYFSLKKI  120
HESTILEKCL LETKLREQHS EALKLREQLS EAEKEIQRLR EPFERVTSSS SSTSSMSQSV  180
EVVDPPFLGE FGVDNGYDDD VFFMPNETCY YNGMEWISLY M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13455RKRSKKNKGGENSANDMNKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.243200.0flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g019650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621210.0CR962121.2 Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611946.11e-164homeobox-leucine zipper protein ATHB-40
SwissprotO232083e-65ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLG7KC721e-163G7KC72_MEDTR; Homeobox leucine zipper protein
STRINGAES949041e-164(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-59homeobox protein 40
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]