PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g021270.2
Common NameMTR_5g021270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27070.1 Da    PI: 9.6751
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g021270.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.5e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey++
  Medtr5g021270.2  9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIT 59
                     569**********************************************86 PP
2K-box69.11.5e-23761746100
            K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                      g   l+ +++e++ ++l+kLk+ +++L+r++Rh++Ge   +L++Ls+++L++Le+++++s+ kiR++K +++++ +++ +kk ++l++ n +L 
  Medtr5g021270.2  76 GDIdLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEggmELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLL 169
                      43359******************************995556***************************************************98 PP

            K-box  96 kklee 100
                       +l+e
  Medtr5g021270.2 170 LELKE 174
                      88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.469161IPR002100Transcription factor, MADS-box
CDDcd002654.18E-38277No hitNo description
SuperFamilySSF554551.06E-34296IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.4E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1883171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.28385178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYITP  60
GLSTKKIIDQ YQKTLGDIDL WRSHYEKMLE NLKKLKDINH KLRRQIRHRI GEGGMELDDL  120
SFQQLRSLEE DMNSSIAKIR ERKFHVIKTR TDTCRKKVRS LEQMNGNLLL ELKEKCVIHP  180
QFLFHDEGDE ESAVALANGA STLYAFCQHH SHLNLPHHHG EEGYKNDDLR LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15162162MEF2 CHIMERA
6byy_B3e-15162162MEF2 CHIMERA
6byy_C3e-15162162MEF2 CHIMERA
6byy_D3e-15162162MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.166630.0leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Function -- GeneRIF ? help Back to Top
  1. MtNMH7 contribution to petal identity is more important than that of MtTM6, whereas MtTM6 plays a more important role in stamen identity than its paralog MtNMH7.
    [PMID: 23146152]
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g021270.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4120970.0JN412097.1 Medicago truncatula MADS-box transcription factor TM6 (TM6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453542.11e-173floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J21e-100TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A072UCQ01e-171A0A072UCQ0_MEDTR; MADS-box transcription factor
STRINGAES950591e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Roque E, et al.
    Functional specialization of duplicated AP3-like genes in Medicago truncatula.
    Plant J., 2013. 73(4): p. 663-75
    [PMID:23146152]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]