PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g021580.1
Common NameMTR_5g021580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family DBB
Protein Properties Length: 186aa    MW: 20384.1 Da    PI: 7.3755
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g021580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-07433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e+  ++ fC  ++  lC+ C ++ H
  Medtr5g021580.1  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                     7**************************998 PP
2zf-B_box30.95.8e-105291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Medtr5g021580.1 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91
                     5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
PfamPF006437.4E-6342IPR000315B-box-type zinc finger
CDDcd000211.15E-6345No hitNo description
SuperFamilySSF578459.61E-64886No hitNo description
SMARTSM003362.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006439.2E-85290IPR000315B-box-type zinc finger
CDDcd000211.50E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKPSN ADNPASQPLD  120
PGDIKRGQSP LPKQKMGEKQ QNHRMPPVPT SEPNADGNSK MENKLIDLNM KPNNRIHEHA  180
SNNQP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.89380.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g021580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954481e-178BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987721e-178BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612128.11e-136B-box zinc finger protein 18 isoform X2
SwissprotC0SVM52e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLG7KGE41e-135G7KGE4_MEDTR; Putative transcription factor interactor and regulator Znf-B family
STRINGAES950861e-136(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-76DBB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]