PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g022780.1
Common NameMTR_5g022780
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 248aa    MW: 27846.1 Da    PI: 9.6814
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g022780.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.43e-08167190528
                      CHHHCHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaei 28 
                      +r +r++kNRe+A rsR+RK+++i
  Medtr5g022780.1 167 RRNKRMIKNRESAARSRARKQEKI 190
                      699*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-6163240IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-13164226No hitNo description
SuperFamilySSF579595.44E-5167227No hitNo description
CDDcd147071.65E-22167226No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEEVWKDINL SSLNDQNTRP MIMSTRNSTF GGGVILQDFL TRPLTLDPTK SLDYSSNNSS  60
SSVASDQNNN NASFYCPIST TPPPLVTALS LNSRPDFLYD PLIRHNKHNN SQLLLQQQQH  120
NIGVSNVSPC FVNASPCDQN VGVPASSSFT CFGKRFGEAP DISPGERRNK RMIKNRESAA  180
RSRARKQEKI TSFLFSKFSA YTNELEQKVQ LLQEENARLR RQQQELWEAE SGGQQKKKSS  240
LYRTSSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g022780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235710.0AC123571.8 Medicago truncatula clone mth1-14n3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640475.11e-147protein FD
TrEMBLG7JXL90.0G7JXL9_MEDTR; Basic leucine zipper transcription factor
STRINGAES951901e-168(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37553252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.13e-23bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]