PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g023900.1
Common NameMTR_5g023900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 192aa    MW: 20922.5 Da    PI: 3.8969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g023900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000181102323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      C  C+ +F+++  L++H+   H
  Medtr5g023900.1  81 CYRCKHVFPTWAALMNHMEErH 102
                      999***************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028081102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MQNPNPSKNS APTTNKSPQD PPSDDEFPKK TNPTTLQISS SMEEEDILKT ALEVLVEFRA  60
RENGKSNICE VKDHASVYPN CYRCKHVFPT WAALMNHMEE RHFCCDPNGS LAPPGFSALP  120
STSTAIPPQP DQYEGDDESQ PMEIEDRSDD AASESDDAAS ESDEGDDAAS ESDEGKGLGF  180
DLNELPPNEE E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g023900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4755680.0CU475568.2 Medicago truncatula chromosome 5 clone mth2-61f16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7K0231e-137G7K023_MEDTR; Uncharacterized protein
STRINGAES952901e-138(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]