PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g023910.1
Common NameMTR_5g023910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 247aa    MW: 26526.9 Da    PI: 4.2904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g023910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05117138223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +Cp C++ F ++     H+r+H
  Medtr5g023910.1 117 TCPECKRQFATWKAAFGHMRKH 138
                      6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MENVPVNESS PNNTTPATSP QRTLAEHDQP PVETNTEGDT VLKTPEEVLA ELTDDDDDLI  60
PKGGDEGNEE DDGAFRTMVI ALTADGSSVI QQVGSDGHVF KKRKGNQLKD PPSGSPTCPE  120
CKRQFATWKA AFGHMRKHPE RAHRGFFPPP TFSTVAPVPA EGDGLGDKIN EGVSSLAREL  180
VFDLNRSIES TAGSSAGGSG HITKEIQAAP APEPAPAPAE NEERRRRDFD LNELPPPEED  240
EETEEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g023910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4755680.0CU475568.2 Medicago truncatula chromosome 5 clone mth2-61f16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7K0241e-178G7K024_MEDTR; Uncharacterized protein
STRINGAES952911e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.19e-17C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]