PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g028850.2
Common NameMTR_5g028850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 401aa    MW: 43044.4 Da    PI: 6.7096
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g028850.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1666.4e-21304366163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e+++l se+
  Medtr5g028850.2 304 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRLEVNRIRSEYDQLLSEN 366
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-30195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.2E-55133271No hitNo description
Gene3DG3DSA:1.20.5.1709.6E-18297363No hitNo description
PfamPF001706.1E-20304366IPR004827Basic-leucine zipper domain
SMARTSM003386.9E-22304368IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.944306369IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-11307363No hitNo description
CDDcd147025.47E-23309360No hitNo description
PROSITE patternPS000360311326IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGNSEMDKTT REKESKTPPP TSQPSTTTST GQVNTDWASF QAYSPMPPHG FMASSPQAHP  60
YMWGVQHMMP PYGTPPHPYV AMYPHGGIYA HPSMPPGSYP YPYAMPAPNG IAEASGNTPA  120
SMETDGKPPE VKEKLPIKRS KGSLGSLNMI TGKNNEHGKT EGTSVNGLHS KSGESGSYEG  180
TSEGSDANSQ NGSQLKSGDR LDSFEGEPSQ NGSSVHTSQN GGLNAPHTVV NQTMSILPIS  240
ASGAPGAVAG PTTNLNIGMD YWNAPNSSNI PALRGKVPPT TVAGAVVTGG SRDSVQSQLW  300
LQDERELKRQ RRKQSNRESA RRSRLRKQAE CDELAQRADV LKEENASLRL EVNRIRSEYD  360
QLLSENAALK ERLGEQPGND QHMCNDTQQS GHTEVVQDGH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326RRSRLRK
2320327RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g028850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697910.0AF369791.1 Phaseolus vulgaris bZIP transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453658.10.0bZIP transcription factor 16 isoform X2
SwissprotQ501B21e-159BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A072UD190.0A0A072UD19_MEDTR; BZIP transcription factor family protein
STRINGAES957320.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-122basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]